1J1B Transferase date Dec 03, 2002
title Binary Complex Structure Of Human Tau Protein Kinase I With
authors M.Aoki, T.Yokota, I.Sugiura, C.Sasaki, T.Hasegawa, C.Okumura, T.Ko S.Sugio, T.Matsuzaki
compound source
Molecule: Glycogen Synthase Kinase-3 Beta
Chain: A, B
Synonym: Tau Protein Kinase I, Gsk-3 Beta
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.216 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.800 86.300 178.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand ANP enzyme Transferase E.C.2.7.1.37 BRENDA
related structures by homologous chain: 1Q5K
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • protein serine/threonine kin...
  • excitatory postsynaptic pote...
  • positive regulation of mitoc...
  • beta-catenin destruction com...
  • Primary referenceStructural insight into nucleotide recognition in tau-protein kinase I/glycogen synthase kinase 3 beta., Aoki M, Yokota T, Sugiura I, Sasaki C, Hasegawa T, Okumura C, Ishiguro K, Kohno T, Sugio S, Matsuzaki T, Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):439-46. Epub 2004, Feb 25. PMID:14993667
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (128 Kb) [Save to disk]
  • Biological Unit Coordinates (1j1b.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 1J1B
  • CSU: Contacts of Structural Units for 1J1B
  • Likely Quarternary Molecular Structure file(s) for 1J1B
  • Structure Factors (1027 Kb)
  • Retrieve 1J1B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J1B from S2C, [Save to disk]
  • Re-refined 1j1b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J1B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J1B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J1B, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j1ba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j1bb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j1b] [1j1b_B] [1j1b_A]
  • SWISS-PROT database: [P49841]
  • Domain organization of [GSK3B_HUMAN] by SWISSPFAM
  • Domain found in 1J1B: [S_TKc ] by SMART
  • Other resources with information on 1J1B
  • Community annotation for 1J1B at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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