1J2G Oxidoreductase date Jan 05, 2003
title Crystal Structure Of Urate Oxidase From Bacillus Sp. Tb-90 C Crystallized With 8-Azaxanthine
authors T.Hibi, T.Nago, Y.Nishiya, J.Oda
compound source
Molecule: Uricase
Chain: A, B, C, D
Fragment: Residues 1-319
Synonym: Urate Oxidase
Ec: 1.7.3.3
Engineered: Yes
 Organism_scientific: Bacillus Sp.
Organism_taxid: 36824
Strain: Tb-90
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jm109
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Puo6
symmetry Space Group: P 21 21 2
R_factor 0.180 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
133.390 144.410 78.785 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand AZA, SO4 enzyme Oxidoreductase E.C.1.7.3.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (214 Kb) [Save to disk]
  • Biological Unit Coordinates (1j2g.pdb1.gz) 207 Kb
  • LPC: Ligand-Protein Contacts for 1J2G
  • CSU: Contacts of Structural Units for 1J2G
  • Likely Quarternary Molecular Structure file(s) for 1J2G
  • Structure Factors (591 Kb)
  • Retrieve 1J2G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J2G from S2C, [Save to disk]
  • Re-refined 1j2g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1J2G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J2G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J2G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j2ga2, region A:159-312 [Jmol] [rasmolscript] [script source]
        - Domain d1j2ga1, region A:7-158 [Jmol] [rasmolscript] [script source]
        - Domain d1j2gb2, region B:159-312 [Jmol] [rasmolscript] [script source]
        - Domain d1j2gb1, region B:7-158 [Jmol] [rasmolscript] [script source]
        - Domain d1j2gc2, region C:159-312 [Jmol] [rasmolscript] [script source]
        - Domain d1j2gc1, region C:7-158 [Jmol] [rasmolscript] [script source]
        - Domain d1j2gd2, region D:159-312 [Jmol] [rasmolscript] [script source]
        - Domain d1j2gd1, region D:7-158 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j2g_C] [1j2g_A] [1j2g_B] [1j2g] [1j2g_D]
  • SWISS-PROT database: [Q45697]
  • Domain organization of [PUCL_BACSB] by SWISSPFAM
    • Other resources with information on 1J2G
  • Community annotation for 1J2G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science