1J3M Structural Genomics, Unknown Function date Feb 05, 2003
title Crystal Structure Of The Conserved Hypothetical Protein Tt1751 From Thermus Thermophilus Hb8
authors S.Kishishita, T.Terada, M.Shirouzu, S.Kuramitsu, S.Y.Park, R.H.Tame, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: The Conserved Hypothetical Protein Tt1751
Chain: A, B
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B834(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11b
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.603 78.811 44.688 90.00 116.64 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand SO3 enzyme
Primary referenceCrystal structure of a conserved hypothetical protein TT1751 from Thermus thermophilus HB8., Kishishita S, Tatsuguchi A, Ushikoshi-Nakayama R, Terada T, Kuramitsu S, Park SY, Tame JR, Shirouzu M, Yokoyama S, Proteins 2004 Oct 12;57(4):883-887. PMID:15481054
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (1j3m.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1J3M
  • CSU: Contacts of Structural Units for 1J3M
  • Likely Quarternary Molecular Structure file(s) for 1J3M
  • Retrieve 1J3M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J3M from S2C, [Save to disk]
    • View 1J3M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1J3M
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J3M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j3ma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1j3mb_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j3m_A] [1j3m_B] [1j3m]
  • SWISS-PROT database: [Q84BQ8]
  • Domain organization of [Q84BQ8_THETH] by SWISSPFAM
    • Other resources with information on 1J3M
  • Community annotation for 1J3M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science