1J8F	Gene Regulation, Transferase	date	May 21, 2001
title	Human Sirt2 Histone Deacetylase
authors	N.P.Pavletich, M.S.Finnin, J.R.Donigian
compound		source
Molecule: Sirtuin 2, Isoform 1 Chain: A, B, C Synonym: Sirt2; Sir2-Related Protein Type 2; Silencing Info Regulator 2-Like; Sir2-Like 2; Silent Mating Type Informati Regulation 2, S.Cerevisiae, Homolog 2; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Sirt2 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t3
symmetry	Space Group: C 2 2 21	R_factor 0.235 R_Free 0.260
crystal cell	length a length b length c angle alpha angle beta angle gamma 78.943 119.070 218.220 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Structure of the histone deacetylase SIRT2., Finnin MS, Donigian JR, Pavletich NP, Nat Struct Biol 2001 Jul;8(7):621-5. PMID:11427894

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (227 Kb) [Save to disk] Biological Unit Coordinates (1j8f.pdb1.gz) 75 Kb Biological Unit Coordinates (1j8f.pdb2.gz) 75 Kb Biological Unit Coordinates (1j8f.pdb3.gz) 76 Kb LPC: Ligand-Protein Contacts for 1J8F CSU: Contacts of Structural Units for 1J8F Likely Quarternary Molecular Structure file(s) for 1J8F Structure Factors (961 Kb) Retrieve 1J8F in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1J8F from S2C, [Save to disk] Re-refined 1j8f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1J8F in 3D

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Visual 3D analysis of 1J8F

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1J8F, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1j8fa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1j8fb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1j8fc_, region C [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1j8f_B] [1j8f_C] [1j8f_A] [1j8f] SWISS-PROT database: [Q8IXJ6] Domain organization of [SIRT2_HUMAN] by SWISSPFAM

Other resources with information on 1J8F

Community annotation for 1J8F at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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