OCA Atlas for 1JDB

1JDB

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ADP, CL, GLN, K, MN, NET, ORN, PO4

enzyme

related structures

by homologous chain: 1C30, 1T36

Gene
Ontology

Chain	Function	Process	Component
H, E, K, B
I, C, L, F

Primary reference

The structure of carbamoyl phosphate synthetase determined to 2.1 A resolution., Thoden JB, Raushel FM, Benning MM, Rayment I, Holden HM, Acta Crystallogr D Biol Crystallogr. 1999 Jan;55(Pt 1):8-24. Epub 1999 Jan, 1. PMID:10089390

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1002 Kb) [Save to disk]

Biological Unit Coordinates (1jdb.pdb1.gz) 987 Kb

Biological Unit Coordinates (1jdb.pdb2.gz) 260 Kb

Biological Unit Coordinates (1jdb.pdb3.gz) 259 Kb

Biological Unit Coordinates (1jdb.pdb4.gz) 260 Kb

Biological Unit Coordinates (1jdb.pdb5.gz) 260 Kb

LPC: Ligand-Protein Contacts for 1JDB

CSU: Contacts of Structural Units for 1JDB

Likely Quarternary Molecular Structure file(s) for 1JDB

Retrieve 1JDB in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1JDB from S2C, [Save to disk]

View 1JDB in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jdb_F] [1jdb_H] [1jdb_I] [1jdb_K] [1jdb_L] [1jdb] [1jdb_B] [1jdb_C] [1jdb_E]

SWISS-PROT database: [P0A6F1] [P00968]

Domains found in 1JDB: [CPSase_L_D3] [CPSase_sm_chain] [MGS ] by SMART

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