1JFP Signaling Protein, Membrane Protein date Jun 21, 2001
title Structure Of Bovine Rhodopsin (Dark Adapted)
authors P.L.Yeagle, G.Choi, A.D.Albert
compound source
Molecule: Rhodopsin
Chain: A
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
methodSolution NMR
ligand RET enzyme
related structures by homologous chain: 1EDS, 1LN6
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStudies on the structure of the G-protein-coupled receptor rhodopsin including the putative G-protein binding site in unactivated and activated forms., Yeagle PL, Choi G, Albert AD, Biochemistry 2001 Oct 2;40(39):11932-7. PMID:11570894
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (1jfp.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 1JFP
  • CSU: Contacts of Structural Units for 1JFP
  • Retrieve 1JFP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JFP from S2C, [Save to disk]
    • View 1JFP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JFP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JFP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jfpa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jfp] [1jfp_A]
  • SWISS-PROT database: [P02699]
  • Domain organization of [OPSD_BOVIN] by SWISSPFAM
    • Other resources with information on 1JFP
  • Community annotation for 1JFP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1JFP from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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