1JKT	Transferase	date	Jul 13, 2001
title	Tetragonal Crystal Form Of A Catalytic Domain Of Death-Assoc Protein Kinase
authors	V.Tereshko, M.Teplova, J.Brunzelle, D.M.Watterson, M.Egli
compound		source
Molecule: Death-Associated Protein Kinase Chain: A, B Fragment: Catalytic Domain, Protein Kinase Domain Synonym: Dap Kinase 1 Ec: 2.7.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 41	R_factor 0.272 R_Free 0.297
crystal cell	length a length b length c angle alpha angle beta angle gamma 58.370 58.370 212.610 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.50 Å
ligand		enzyme	Transferase E.C.2.7.1 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of the catalytic domain of human protein kinase associated with apoptosis and tumor suppression., Tereshko V, Teplova M, Brunzelle J, Watterson DM, Egli M, Nat Struct Biol 2001 Oct;8(10):899-907. PMID:11573098

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (1jkt.pdb1.gz) 44 Kb Biological Unit Coordinates (1jkt.pdb2.gz) 44 Kb CSU: Contacts of Structural Units for 1JKT Likely Quarternary Molecular Structure file(s) for 1JKT Structure Factors (66 Kb) Retrieve 1JKT in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JKT from S2C, [Save to disk] Re-refined 1jkt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JKT in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JKT

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JKT, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jkta_, region A [Jmol] [rasmolscript] [script source]     - Domain d1jktb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jkt_B] [1jkt_A] [1jkt] SWISS-PROT database: [P53355] Domain organization of [DAPK1_HUMAN] by SWISSPFAM Domain found in 1JKT: [S_TKc ] by SMART

Other resources with information on 1JKT

Community annotation for 1JKT at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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