1JM4 Transferase date Jul 17, 2001
title Nmr Structure Of Pcaf Bromodomain In Complex With Hiv-1 Tat
authors S.Mujtaba, Y.He, L.Zeng, A.Farooq, J.E.Carlson, M.Ott, E.Verdin, M.
compound source
Molecule: Hiv-1 Tat Peptide
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized.

Molecule: P300cbp-Associated Factor
Chain: B
Fragment: Bromodomain
Synonym: Pcaf
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet14b
methodSolution NMR
ligand ALY enzyme
related structures by homologous chain: 1F68, 1N72
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructural basis of lysine-acetylated HIV-1 Tat recognition by PCAF bromodomain., Mujtaba S, He Y, Zeng L, Farooq A, Carlson JE, Ott M, Verdin E, Zhou MM, Mol Cell 2002 Mar;9(3):575-86. PMID:11931765
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (884 Kb) [Save to disk]
  • Biological Unit Coordinates (1jm4.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1JM4
  • CSU: Contacts of Structural Units for 1JM4
  • Retrieve 1JM4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JM4 from S2C, [Save to disk]
    • View 1JM4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JM4
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JM4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jm4b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jm4_B] [1jm4_A] [1jm4]
  • SWISS-PROT database: [Q92831] [P04610]
  • Domain organization of [KAT2B_HUMAN] [TAT_HV1BR] by SWISSPFAM
  • Domain found in 1JM4: [BROMO ] by SMART
    • Other resources with information on 1JM4
  • Community annotation for 1JM4 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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