1JNM Transcription Dna date Jul 24, 2001
title Crystal Structure Of The Juncre Complex
authors Y.Kim, L.M.Podust
compound source
Molecule: 5'-D(Cpgptpcpgpaptpgpapcpgptpcpapt Cpg)-3';
Chain: C, D
Engineered: Yes
Other_details: Camp Response Element (Cre) Dna Target
 Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans.

Molecule: Proto-Oncogene C-Jun
Chain: A, B
Fragment: Bzip Domain
Synonym: Transcription Factor Ap-1
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.228 R_Free 0.286
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.719 78.213 57.342 90.00 110.79 90.00
method X-Ray Diffractionresolution 2.20 Å
related structures by homologous chain: 1A02
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1jnm.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 1JNM
  • Likely Quarternary Molecular Structure file(s) for 1JNM
  • Retrieve 1JNM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JNM from S2C, [Save to disk]
    • View 1JNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JNM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JNM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jnma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jnmb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jnm_B] [1jnm_A] [1jnm] [1jnm_D] [1jnm_C]
  • SWISS-PROT database: [P05412]
  • Domain organization of [JUN_HUMAN] by SWISSPFAM
  • Domain found in 1JNM: [BRLZ ] by SMART
    • Other resources with information on 1JNM
  • Community annotation for 1JNM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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