1A02 Transcription Dna date Dec 08, 1997
title Structure Of The Dna Binding Domains Of Nfat, Fos And Jun Bound To Dna
authors L.Chen, J.N.M.Glover, P.G.Hogan, A.Rao, S.C.Harrison
compound source
Molecule: Dna (5'- D(Dtpdtpdgpdgpdapdapdapdapdtpdtpdtpdgpdtpdtp Dtpdcpdapdtpdapdg)-3');
Chain: A
Engineered: Yes
Synthetic: Yes

Molecule: Dna (5'- D(Dapdapdcpdtpdapdtpdgpdapdapdapdcpdapdapdap Dtpdtpdtpdtpdcpdc)-3');
Chain: B
Engineered: Yes

Synthetic: Yes

Molecule: Nuclear Factor Of Activated T Cells
Chain: N
Synonym: Nfat
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cell: T-Lymphocyte
Gene: Nfat1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Plm1

Molecule: Ap-1 Fragment Fos
Chain: F
Fragment: Fos
Synonym: Fos
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ap-1 Fragment Jun
Chain: J
Fragment: Jun
Synonym: Jun
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.246 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.660 85.460 83.370 90.00 112.03 90.00
method X-Ray Diffractionresolution 2.70 Å
related structures by homologous chain: 1JNM, 1OWR, 1P7H, 1T2K
Gene
Ontology
ChainFunctionProcessComponent
F


J


N


Primary referenceStructure of the DNA-binding domains from NFAT, Fos and Jun bound specifically to DNA., Chen L, Glover JN, Hogan PG, Rao A, Harrison SC, Nature 1998 Mar 5;392(6671):42-8. PMID:9510247
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (1a02.pdb1.gz) 81 Kb
  • CSU: Contacts of Structural Units for 1A02
  • Likely Quarternary Molecular Structure file(s) for 1A02
  • Structure Factors (157 Kb)
  • Retrieve 1A02 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1A02 from S2C, [Save to disk]
  • Re-refined 1a02 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1A02 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1A02
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1A02, from MSDmotif at EBI
  • Genome occurence of 1A02's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1a02f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1a02j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1a02n2, region N:399-576 [Jmol] [rasmolscript] [script source]
        - Domain d1a02n1, region N:577-678 [Jmol] [rasmolscript] [script source]
  • Fold representative 1a02 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1a02_F] [1a02_J] [1a02_A] [1a02_N] [1a02] [1a02_B]
  • SWISS-PROT database: [P01100] [P05412] [Q13469]
  • Domain organization of [FOS_HUMAN] [JUN_HUMAN] [NFAC2_HUMAN] by SWISSPFAM
  • Domains found in 1A02: [BRLZ] [IPT ] by SMART
  • Other resources with information on 1A02
  • Community annotation for 1A02 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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