1P7H Transcription Dna date May 01, 2003
title Structure Of Nfat1 Bound As A Dimer To The Hiv-1 Ltr Kb Elem
authors M.J.Giffin, J.C.Stroud, D.L.Bates, K.D.Von Koenig, J.Hardin, L.Ch
compound source
Molecule: 5'-D(Apaptpgpgpgpgpapcptptptpcpcpa
Chain: A, C
Engineered: Yes
Synthetic: Yes

Molecule: 5'-D(Tptptpgpgpapapapgptpcpcpcpcpa
Chain: B, D
Engineered: Yes

Synthetic: Yes

Molecule: Nuclear Factor Of Activated T-Cells, Cytoplasmic
Chain: L, M, N, O
Fragment: Nfat1
Synonym: T Cell Transcription Factor Nfat1, Nfat Pre-Existi Subunit, Nf-Atp;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nfatc2 Or Nfat1 Or Nfatp
symmetry Space Group: P 1
R_factor 0.231 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.107 80.321 80.308 71.20 78.97 78.94
method X-Ray Diffractionresolution 2.60 Å
related structures by homologous chain: 1A02
Gene
Ontology
ChainFunctionProcessComponent
O, M, N, L


Primary referenceStructure of NFAT1 bound as a dimer to the HIV-1 LTR kappa B element., Giffin MJ, Stroud JC, Bates DL, von Koenig KD, Hardin J, Chen L, Nat Struct Biol 2003 Oct;10(10):800-6. Epub 2003 Aug 31. PMID:12949493
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (216 Kb) [Save to disk]
  • Biological Unit Coordinates (1p7h.pdb1.gz) 107 Kb
  • Biological Unit Coordinates (1p7h.pdb2.gz) 107 Kb
  • CSU: Contacts of Structural Units for 1P7H
  • Likely Quarternary Molecular Structure file(s) for 1P7H
  • Structure Factors (744 Kb)
  • Retrieve 1P7H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P7H from S2C, [Save to disk]
  • Re-refined 1p7h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1P7H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P7H
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P7H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p7hl2, region L:393-575 [Jmol] [rasmolscript] [script source]
        - Domain d1p7hl1, region L:576-678 [Jmol] [rasmolscript] [script source]
        - Domain d1p7hm2, region M:393-575 [Jmol] [rasmolscript] [script source]
        - Domain d1p7hm1, region M:576-678 [Jmol] [rasmolscript] [script source]
        - Domain d1p7hn2, region N:393-575 [Jmol] [rasmolscript] [script source]
        - Domain d1p7hn1, region N:576-678 [Jmol] [rasmolscript] [script source]
        - Domain d1p7ho2, region O:393-575 [Jmol] [rasmolscript] [script source]
        - Domain d1p7ho1, region O:576-678 [Jmol] [rasmolscript] [script source]
  • Fold representative 1p7h from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p7h_D] [1p7h_O] [1p7h_B] [1p7h_M] [1p7h_N] [1p7h_L] [1p7h_A] [1p7h] [1p7h_C]
  • SWISS-PROT database: [Q13469]
  • Domain organization of [NFAC2_HUMAN] by SWISSPFAM
  • Domain found in 1P7H: [IPT ] by SMART
  • Other resources with information on 1P7H
  • Community annotation for 1P7H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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