1JOP Structural Genomics, Unknown Function date Jul 30, 2001
title Yhch Protein (Hi0227)
authors A.Teplyakov, G.Obmolova, G.L.Gilliland, Structure 2 Function Project (S2f)
compound source
Molecule: Yhch Protein
Chain: A, B, C, D
Synonym: Protein Hi0227
Engineered: Yes
 Organism_scientific: Haemophilus Influenzae
Organism_taxid: 727
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.185 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.100 152.300 53.400 90.00 113.60 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand HG enzyme
related structures by homologous chain: 1S4C
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of the bacterial YhcH protein indicates a role in sialic acid catabolism., Teplyakov A, Obmolova G, Toedt J, Galperin MY, Gilliland GL, J Bacteriol. 2005 Aug;187(16):5520-7. PMID:16077096
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (1jop.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (1jop.pdb2.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1JOP
  • CSU: Contacts of Structural Units for 1JOP
  • Likely Quarternary Molecular Structure file(s) for 1JOP
  • Retrieve 1JOP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JOP from S2C, [Save to disk]
    • View 1JOP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JOP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JOP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jopa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jopb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1jopc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1jopd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jop_D] [1jop_A] [1jop_C] [1jop_B] [1jop]
  • SWISS-PROT database: [P44583]
  • Domain organization of [Y227_HAEIN] by SWISSPFAM
    • Other resources with information on 1JOP
  • Community annotation for 1JOP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science