1JR7 Oxidoreductase, Lyase date Aug 12, 2001
title Crystal Structure Of Gab Reveals Oxidoreductase Fold
authors C.D.Lima, S.K.Burley, New York Sgx Research Center For Structu Genomics (Nysgxrc)
compound source
Molecule: Hypothetical 37.4 Kda Protein In Iley-Gabd Interg Region;
Chain: A
Fragment: N-Terminal Truncation Ndelta14
Synonym: Gabt Protein
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Gab; Ygat
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: T7 Promoter
Expression_system_plasmid: Pet28b
symmetry Space Group: I 4 2 2
R_factor 0.193 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
120.479 120.479 136.604 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand FE2 enzyme
note 1JR7 is a representative structure and supersedes 1JFY
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural genomics: a pipeline for providing structures for the biologist., Chance MR, Bresnick AR, Burley SK, Jiang JS, Lima CD, Sali A, Almo SC, Bonanno JB, Buglino JA, Boulton S, Chen H, Eswar N, He G, Huang R, Ilyin V, McMahan L, Pieper U, Ray S, Vidal M, Wang LK, Protein Sci 2002 Apr;11(4):723-38. PMID:11910018
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (60 Kb) [Save to disk]
  • Biological Unit Coordinates (1jr7.pdb1.gz) 219 Kb
  • LPC: Ligand-Protein Contacts for 1JR7
  • CSU: Contacts of Structural Units for 1JR7
  • Likely Quarternary Molecular Structure file(s) for 1JR7
  • Structure Factors (303 Kb)
  • Retrieve 1JR7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JR7 from S2C, [Save to disk]
  • Re-refined 1jr7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1JR7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JR7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JR7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jr7a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jr7] [1jr7_A]
  • SWISS-PROT database: [P76621]
  • Domain organization of [CSID_ECOLI] by SWISSPFAM
    • Other resources with information on 1JR7
  • Community annotation for 1JR7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science