1KZP	Transferase Transferase Substrate	date	Feb 07, 2002
title	Protein Farnesyltransferase Complexed With A Farnesylated K- Peptide Product
authors	S.B.Long, P.J.Casey, L.S.Beese
compound		source
Molecule: Protein Farnesyltransferase Alpha Subunit Chain: A Synonym: Caax Farnesyltransferase Alpha Subunit, Ras Protei Prenyltransferase Alpha, Ftase-Alpha; Ec: 2.5.1.21 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_atcc_number: 63134 Expression_system_vector_type: Baculovirus
Molecule: Protein Farnesyltransferase Beta Subunit Chain: B Synonym: Caax Farnesyltransferase Beta Subunit, Ras Protein Prenyltransferase Beta, Ftase-Beta; Ec: 2.5.1.21 Engineered: Yes		Organism_scientific: Rattus Norvegicus Organism_common: Norway Rat Organism_taxid: 10116 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_atcc_number: 63134 Expression_system_vector_type: Baculovirus
Molecule: Farnesylated K-Ras4b Peptide Product Chain: C Synonym: Transforming Protein P21b Engineered: Yes		Synthetic: Yes Other_details: The Protein Was Chemically Synthesized. The Of The Protein Is Naturally Found In Homo Sapiens.
symmetry	Space Group: P 61	R_factor 0.164 R_Free 0.202
crystal cell	length a length b length c angle alpha angle beta angle gamma 171.239 171.239 69.361 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ACY, FAR, ZN	enzyme	Transferase E.C.2.5.1.21 BRENDA
related structures	by homologous chain: 1LD7, 1SA4
Gene Ontology	Chain Function Process Component A acetylcholine receptor regul... B
Primary reference	Reaction path of protein farnesyltransferase at atomic resolution., Long SB, Casey PJ, Beese LS, Nature 2002 Oct 10;419(6907):645-50. PMID:12374986

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk] Biological Unit Coordinates (1kzp.pdb1.gz) 127 Kb LPC: Ligand-Protein Contacts for 1KZP CSU: Contacts of Structural Units for 1KZP Likely Quarternary Molecular Structure file(s) for 1KZP Structure Factors (571 Kb) Retrieve 1KZP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1KZP from S2C, [Save to disk] Re-refined 1kzp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1KZP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1KZP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1KZP, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1kzpa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1kzpb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1kzp] [1kzp_A] [1kzp_B] [1kzp_C] SWISS-PROT database: [Q04631] [Q02293] [P01116] Domain organization of [FNTA_RAT] [FNTB_RAT] [RASK_HUMAN] by SWISSPFAM

Other resources with information on 1KZP

Community annotation for 1KZP at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---