1LD7 Transferase date Apr 08, 2002
title Co-Crystal Structure Of Human Farnesyltransferase With Farnesyldiphosphate And Inhibitor Compound 66
authors J.S.Taylor, K.L.Terry, L.S.Beese
compound source
Molecule: Protein Farnesyltransferase Alpha Subunit
Chain: A
Synonym: Caax Farnesyltransferase Alpha Subunit, Ras Protei Prenyltransferase Alpha, Ftase-Alpha;
Ec: 2.5.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Protein Farnesyltransferase Beta Subunit
Chain: B
Synonym: Caax Farnesyltransferase Beta Subunit, Ras Protein Prenyltransferase Beta, Ftase-Beta;
Ec: 2.5.1.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61
R_factor 0.195 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
178.725 178.725 64.549 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.00 Å
ligand FPP, SUC, U66, ZN BindingDB enzyme Transferase E.C.2.5.1 BRENDA
related structures by homologous chain: 1KZP, 1MZC
Gene
Ontology
ChainFunctionProcessComponent
A
  • acetylcholine receptor regul...
  • skeletal muscle acetylcholin...

  • B


    Primary reference3-Aminopyrrolidinone farnesyltransferase inhibitors: design of macrocyclic compounds with improved pharmacokinetics and excellent cell potency., Bell IM, Gallicchio SN, Abrams M, Beese LS, Beshore DC, Bhimnathwala H, Bogusky MJ, Buser CA, Culberson JC, Davide J, Ellis-Hutchings M, Fernandes C, Gibbs JB, Graham SL, Hamilton KA, Hartman GD, Heimbrook DC, Homnick CF, Huber HE, Huff JR, Kassahun K, Koblan KS, Kohl NE, Lobell RB, Lynch JJ Jr, Robinson R, Rodrigues AD, Taylor JS, Walsh ES, Williams TM, Zartman CB, J Med Chem 2002 Jun 6;45(12):2388-409. PMID:12036349
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk]
  • Biological Unit Coordinates (1ld7.pdb1.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 1LD7
  • CSU: Contacts of Structural Units for 1LD7
  • Likely Quarternary Molecular Structure file(s) for 1LD7
  • Structure Factors (839 Kb)
  • Retrieve 1LD7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LD7 from S2C, [Save to disk]
  • Re-refined 1ld7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LD7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LD7
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LD7, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ld7a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ld7b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1ld7 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ld7] [1ld7_B] [1ld7_A]
  • SWISS-PROT database: [P49354] [P49356]
  • Domain organization of [FNTA_HUMAN] [FNTB_HUMAN] by SWISSPFAM
  • Other resources with information on 1LD7
  • Community annotation for 1LD7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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