1LD7	Transferase	date	Apr 08, 2002
title	Co-Crystal Structure Of Human Farnesyltransferase With Farnesyldiphosphate And Inhibitor Compound 66
authors	J.S.Taylor, K.L.Terry, L.S.Beese
compound		source
Molecule: Protein Farnesyltransferase Alpha Subunit Chain: A Synonym: Caax Farnesyltransferase Alpha Subunit, Ras Protei Prenyltransferase Alpha, Ftase-Alpha; Ec: 2.5.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Protein Farnesyltransferase Beta Subunit Chain: B Synonym: Caax Farnesyltransferase Beta Subunit, Ras Protein Prenyltransferase Beta, Ftase-Beta; Ec: 2.5.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61	R_factor 0.195 R_Free 0.219
crystal cell	length a length b length c angle alpha angle beta angle gamma 178.725 178.725 64.549 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	FPP, FRU, GLC, U66, ZN BindingDB	enzyme	Transferase E.C.2.5.1 BRENDA
related structures	by homologous chain: 1KZP, 1MZC
Gene Ontology	Chain Function Process Component A acetylcholine receptor regul... skeletal muscle acetylcholin... B
Primary reference	3-Aminopyrrolidinone farnesyltransferase inhibitors: design of macrocyclic compounds with improved pharmacokinetics and excellent cell potency., Bell IM, Gallicchio SN, Abrams M, Beese LS, Beshore DC, Bhimnathwala H, Bogusky MJ, Buser CA, Culberson JC, Davide J, Ellis-Hutchings M, Fernandes C, Gibbs JB, Graham SL, Hamilton KA, Hartman GD, Heimbrook DC, Homnick CF, Huber HE, Huff JR, Kassahun K, Koblan KS, Kohl NE, Lobell RB, Lynch JJ Jr, Robinson R, Rodrigues AD, Taylor JS, Walsh ES, Williams TM, Zartman CB, J Med Chem 2002 Jun 6;45(12):2388-409. PMID:12036349

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (134 Kb) [Save to disk] Biological Unit Coordinates (1ld7.pdb1.gz) 128 Kb LPC: Ligand-Protein Contacts for 1LD7 CSU: Contacts of Structural Units for 1LD7 Likely Quarternary Molecular Structure file(s) for 1LD7 Structure Factors (839 Kb) Retrieve 1LD7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LD7 from S2C, [Save to disk] Re-refined 1ld7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1LD7 in 3D

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Visual 3D analysis of 1LD7

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LD7, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ld7a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ld7b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ld7] [1ld7_B] [1ld7_A] SWISS-PROT database: [P49354] [P49356] Domain organization of [FNTA_HUMAN] [FNTB_HUMAN] by SWISSPFAM

Other resources with information on 1LD7

Community annotation for 1LD7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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