1LDS Crystal Structure of monomeric human beta-2-microglobulin date
authors Trinh, C.H., Smith, D.P., Kalverda, A.P., Phillips, S.E.V., Radford, S.E.
compound source
symmetry
R_factor
R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand NA enzyme
related structures by homologous chain: 1TVB, 1TVH
Gene
Ontology
ChainFunctionProcessComponent
A
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  • Primary referenceCrystal structure of monomeric human beta-2-microglobulin reveals clues to its amyloidogenic properties., Trinh CH, Smith DP, Kalverda AP, Phillips SE, Radford SE, Proc Natl Acad Sci U S A 2002 Jul 23;99(15):9771-6. PMID:12119416
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1lds.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1LDS
  • CSU: Contacts of Structural Units for 1LDS
  • Likely Quarternary Molecular Structure file(s) for 1LDS
  • Structure Factors (108 Kb)
  • Retrieve 1LDS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LDS from S2C, [Save to disk]
  • Re-refined 1lds structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LDS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LDS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LDS, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ldsa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lds] [1lds_A]
  • SWISS-PROT database: [P61769]
  • Domain organization of [B2MG_HUMAN] by SWISSPFAM
  • Domain found in 1LDS: [IGc1 ] by SMART
  • Other resources with information on 1LDS
  • Community annotation for 1LDS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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