1TVB Immune System date Jun 29, 2004
title Crystal Structure Of Melanoma Antigen Gp100(209-217) Bound T Class I Mhc Hla-A2
authors O.Y.Borbulevych, B.M.Baker
compound source
Molecule: Hla Class I Histocompatibility Antigen, A-2 Alpha
Chain: A, D
Fragment: Alpha-Chain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-A, Hlaa
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phn1

Molecule: Beta-2-Microglobulin
Chain: B, E
Fragment: Beta-Chain
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Phn1
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Plm1

Molecule: Epitope Of Melanocyte Protein Pmel 17
Chain: C, F
Fragment: Residues 209-217
Engineered: Yes
Other_details: Native Epitope

Synthetic: Yes
Other_details: Sequence Occurs Naturally In Humans
symmetry Space Group: P 1 21 1
R_factor 0.165 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.388 84.452 84.016 90.00 90.01 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand GOL enzyme
related structures by homologous chain: 1LDS, 1TVH, 1XR9
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


Primary referenceIncreased Immunogenicity of an Anchor-Modified Tumor-Associated Antigen Is Due to the Enhanced Stability of the Peptide/MHC Complex: Implications for Vaccine Design., Borbulevych OY, Baxter TK, Yu Z, Restifo NP, Baker BM, J Immunol 2005 Apr 15;174(8):4812-20. PMID:15814707
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (1tvb.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (1tvb.pdb2.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1TVB
  • CSU: Contacts of Structural Units for 1TVB
  • Likely Quarternary Molecular Structure file(s) for 1TVB
  • Structure Factors (1007 Kb)
  • Retrieve 1TVB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TVB from S2C, [Save to disk]
  • Re-refined 1tvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1TVB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1TVB
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1TVB, from MSDmotif at EBI
  • Fold representative 1tvb from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tvb_E] [1tvb_A] [1tvb_B] [1tvb_C] [1tvb_D] [1tvb] [1tvb_F]
  • SWISS-PROT database: [P01892] [P61769] [P40967]
  • Domain organization of [1A02_HUMAN] [B2MG_HUMAN] [PME17_HUMAN] by SWISSPFAM
  • Domain found in 1TVB: [IGc1 ] by SMART
  • Alignments of the sequence of 1TVB with the sequences similar proteins can be viewed for 1TVB's classification [1A02_HUMAN] [B2MG_HUMAN] [PME17_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [1A02_HUMAN] [B2MG_HUMAN] [PME17_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1TVB
  • Community annotation for 1TVB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science