1TVB Crystal structure of Melanoma Antigen gp100(209-217) Bound to Human Class I MHC HLA-A2 date
authors Borbulevych, O.Y., Baker, B.M.
compound source
symmetry
R_factor
R_Free 0.21618
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.80
ligand GOL enzyme
related structures by homologous chain: 1LDS, 1TVH, 1XR9
Gene
Ontology
ChainFunctionProcessComponent
E, B
  • cellular response to iron io...

    • Primary referenceIncreased Immunogenicity of an Anchor-Modified Tumor-Associated Antigen Is Due to the Enhanced Stability of the Peptide/MHC Complex: Implications for Vaccine Design., Borbulevych OY, Baxter TK, Yu Z, Restifo NP, Baker BM, J Immunol 2005 Apr 15;174(8):4812-20. PMID:15814707
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (1tvb.pdb1.gz) 77 Kb
  • Biological Unit Coordinates (1tvb.pdb2.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 1TVB
  • CSU: Contacts of Structural Units for 1TVB
  • Likely Quarternary Molecular Structure file(s) for 1TVB
  • Structure Factors (1007 Kb)
  • Retrieve 1TVB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TVB from S2C, [Save to disk]
  • Re-refined 1tvb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1TVB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TVB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TVB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tvb_E] [1tvb_A] [1tvb_B] [1tvb_C] [1tvb_D] [1tvb] [1tvb_F]
  • SWISS-PROT database: [P01892] [P61769] [P40967]
  • Domain organization of [1A02_HUMAN] [B2MG_HUMAN] [PME17_HUMAN] by SWISSPFAM
  • Domain found in 1TVB: [IGc1 ] by SMART
    • Other resources with information on 1TVB
  • Community annotation for 1TVB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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