1XR9 Crystal Structures of HLA-B*1501 in Complex with Peptides from Human UbcH6 and Epstein-Barr Virus EBNA-3 date
authors Roder, G., Blicher, T., Johannessen, B.R., Kristensen, O., Buus, S., Gajhede, M.
compound source
R_Free 0.23151
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.79
ligand GOL, SO4, URE enzyme
related structures by homologous chain: 1LEG, 1TVB
  • cellular response to iron io...

  • Primary referenceCrystal structures of two peptide-HLA-B*1501 complexes; structural characterization of the HLA-B62 supertype., Roder G, Blicher T, Justesen S, Johannesen B, Kristensen O, Kastrup J, Buus S, Gajhede M, Acta Crystallogr D Biol Crystallogr. 2006 Nov;62(Pt 11):1300-10. Epub 2006, Oct 18. PMID:17057332
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1xr9.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 1XR9
  • CSU: Contacts of Structural Units for 1XR9
  • Likely Quarternary Molecular Structure file(s) for 1XR9
  • Structure Factors (327 Kb)
  • Retrieve 1XR9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1XR9 from S2C, [Save to disk]
  • Re-refined 1xr9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1XR9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1XR9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1XR9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1xr9] [1xr9_C] [1xr9_A] [1xr9_B]
  • SWISS-PROT database: [P30464] [P61769] [P51965]
  • Domain organization of [1B15_HUMAN] [B2MG_HUMAN] [UB2E1_HUMAN] by SWISSPFAM
  • Domain found in 1XR9: [IGc1 ] by SMART
  • Other resources with information on 1XR9
  • Community annotation for 1XR9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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