1LEZ Transferase date Apr 10, 2002
title Crystal Structure Of Map Kinase P38 Complexed To The Docking Its Activator Mkk3b
authors C.I.Chang, B.E.Xu, R.Akella, M.H.Cobb, E.J.Goldsmith
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase P38, Mitogen-Activated Protein Kinase P
Ec: 2.7.1.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: P38
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet14b

Molecule: Map Kinase Kinase 3b
Chain: B
Synonym: Mkk3b
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 31 2 1
R_factor 0.216 R_Free 0.249
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.353 82.353 123.266 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand
enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1BMK, 1LEW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of MAP kinase p38 complexed to the docking sites on its nuclear substrate MEF2A and activator MKK3b., Chang CI, Xu BE, Akella R, Cobb MH, Goldsmith EJ, Mol Cell 2002 Jun;9(6):1241-9. PMID:12086621
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1lez.pdb1.gz) 58 Kb
  • CSU: Contacts of Structural Units for 1LEZ
  • Likely Quarternary Molecular Structure file(s) for 1LEZ
  • Retrieve 1LEZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LEZ from S2C, [Save to disk]
  • View 1LEZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LEZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LEZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1leza_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lez] [1lez_B] [1lez_A]
  • SWISS-PROT database: [P47811]
  • Domain organization of [MK14_MOUSE] by SWISSPFAM
  • Domain found in 1LEZ: [S_TKc ] by SMART
  • Other resources with information on 1LEZ
  • Community annotation for 1LEZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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