1LG4 Prion Protein date Apr 15, 2002
title Nmr Structure Of The Human Doppel Protein Fragment 24-152
authors T.Luhrs, R.Riek, P.Guntert, K.Wuthrich
compound source
Molecule: Prion-Like Protein
Chain: A
Fragment: Hdpl(24-152)
Synonym: Doppel Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Prnd
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21de3
Expression_system_plasmid: Prseta
methodSolution NMR
related structures by homologous chain: 1I17

Primary referenceNMR structure of the human doppel protein., Luhrs T, Riek R, Guntert P, Wuthrich K, J Mol Biol 2003 Mar 7;326(5):1549-57. PMID:12595265
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (524 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1LG4
  • Original NMR restraints for 1LG4 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1LG4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LG4 from S2C, [Save to disk]
  • View 1LG4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LG4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1LG4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lg4a_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1lg4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lg4_A] [1lg4]
  • SWISS-PROT database: [Q9UKY0]
  • Belongs to the prion peptide (prp) family according to TCDB.
  • Domain organization of [PRND_HUMAN] by SWISSPFAM
  • Other resources with information on 1LG4
  • Community annotation for 1LG4 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science