1LSL	Cell Adhesion	date	May 17, 2002
title	Crystal Structure Of The Thrombospondin-1 Type 1 Repeats
authors	K.Tan, M.Duquette, J.Liu, Y.Dong, R.Zhang, A.Joachimiak, J.Lawler,
compound		source
Molecule: Thrombospondin 1 Chain: A Fragment: Tsp Type 1 Repeats 2 And 3 (Residues 434-546) Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Thbs1 Expression_system: Drosophila Expression_system_common: Fruit Flies Expression_system_taxid: 7215 Expression_system_cell: S2 Cells Expression_system_vector_type: Eukaryotic Expression_system_plasmid: Pmt-Bip-V5-His A
symmetry	Space Group: C 1 2 1	R_factor 0.238 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.630 84.410 37.170 90.00 108.67 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	FUC, FUL	enzyme
note	1LSL is a representative structure
related structures	by homologous chain: 1VEX
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the TSP-1 type 1 repeats: a novel layered fold and its biological implication., Tan K, Duquette M, Liu JH, Dong Y, Zhang R, Joachimiak A, Lawler J, Wang JH, J Cell Biol 2002 Oct 28;159(2):373-82. Epub 2002 Oct 21. PMID:12391027

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk] Biological Unit Coordinates (1lsl.pdb1.gz) 21 Kb LPC: Ligand-Protein Contacts for 1LSL CSU: Contacts of Structural Units for 1LSL Likely Quarternary Molecular Structure file(s) for 1LSL Structure Factors (138 Kb) Retrieve 1LSL in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LSL from S2C, [Save to disk] Re-refined 1lsl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1LSL in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LSL

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LSL, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1lsla1, region A:416-469 [Jmol] [rasmolscript] [script source]     - Domain d1lsla2, region A:470-528 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1lsl] [1lsl_A] SWISS-PROT database: [P07996] Domain organization of [TSP1_HUMAN] by SWISSPFAM Domain found in 1LSL: [TSP1 ] by SMART

Other resources with information on 1LSL

Community annotation for 1LSL at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---