OCA Atlas for 1M5Q

1M5Q

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ACY, CD, GOL, MSE, NA

enzyme

note

1M5Q is a representative structure

Gene
Ontology

Chain	Function	Process	Component
K, Y, L, D, 1, Z, W, X, N, R, G, T, 2, M, E, I, B, V, H, C, Q, S, J, F, P, O, U, A

Primary reference

Structure and assembly of an augmented Sm-like archaeal protein 14-mer., Mura C, Phillips M, Kozhukhovsky A, Eisenberg D, Proc Natl Acad Sci U S A. 2003 Apr 15;100(8):4539-44. Epub 2003 Mar 31. PMID:12668760

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (619 Kb) [Save to disk]

Biological Unit Coordinates (1m5q.pdb1.gz) 307 Kb

Biological Unit Coordinates (1m5q.pdb2.gz) 308 Kb

LPC: Ligand-Protein Contacts for 1M5Q

CSU: Contacts of Structural Units for 1M5Q

Likely Quarternary Molecular Structure file(s) for 1M5Q

Structure Factors (3623 Kb)

Retrieve 1M5Q in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1M5Q from S2C, [Save to disk]

Re-refined 1m5q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1M5Q in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m5q] [1m5q_1] [1m5q_2] [1m5q_A] [1m5q_B] [1m5q_C] [1m5q_D] [1m5q_E] [1m5q_F] [1m5q_G] [1m5q_H] [1m5q_I] [1m5q_J] [1m5q_K] [1m5q_L] [1m5q_M] [1m5q_N] [1m5q_O] [1m5q_P] [1m5q_Q] [1m5q_R] [1m5q_S] [1m5q_T] [1m5q_U] [1m5q_V] [1m5q_W] [1m5q_X] [1m5q_Y] [1m5q_Z]

SWISS-PROT database: [Q8ZVU2]

Domain found in 1M5Q: [Sm ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]