1MFD	Immunoglobulin	date	Oct 25, 1993
title	The Solution Structure Of A Trisaccharide-Antibody Complex: Of Nmr Measurements With A Crystal Structure
authors	A.Zdanov, M.Cygler
compound		source
Molecule: Igg1-Lambda Se155-4 Fab (Light Chain) Chain: L Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
Molecule: Igg1-Lambda Se155-4 Fab (Heavy Chain) Chain: H Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090
symmetry	Space Group: P 21 21 21	R_factor 0.183 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 47.300 129.300 79.900 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	ABE, GLA, MMA	enzyme
related structures	by homologous chain: 1MFC, 1MLB, 1MLC, 1NC2
Primary reference	Solution structure of a trisaccharide-antibody complex: comparison of NMR measurements with a crystal structure., Bundle DR, Baumann H, Brisson JR, Gagne SM, Zdanov A, Cygler M, Biochemistry 1994 May 3;33(17):5183-92. PMID:8172893

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk] Biological Unit Coordinates (1mfd.pdb1.gz) 66 Kb LPC: Ligand-Protein Contacts for 1MFD CSU: Contacts of Structural Units for 1MFD Likely Quarternary Molecular Structure file(s) for 1MFD Retrieve 1MFD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1MFD from S2C, [Save to disk]

View 1MFD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1MFD

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1MFD, from MSDmotif at EBI Genome occurence of 1MFD's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1mfdh1, region H:251-367 [Jmol] [rasmolscript] [script source]     - Domain d1mfdh2, region H:368-468 [Jmol] [rasmolscript] [script source]     - Domain d1mfdl1, region L:1-111 [Jmol] [rasmolscript] [script source]     - Domain d1mfdl2, region L:112-212 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1mfd_L] [1mfd] [1mfd_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 1MFD: [IG_like] [IGv ] by SMART

Other resources with information on 1MFD

Community annotation for 1MFD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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