1ML0	Immune System	date	Aug 29, 2002
title	Viral Chemokine Binding Protein M3 From Murine Gammaherpesvi Complex With The P8a Variant Of Cc-Chemokine Mcp-1
authors	J.M.Alexander, D.H.Fremont
compound		source
Molecule: M3 Protein Chain: A Engineered: Yes		Organism_scientific: Murid Herpesvirus 4 Organism_common: Murine Herpesvirus 68 Organism_taxid: 33708 Gene: M3 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
Molecule: Small Inducible Cytokine Chain: D Synonym: Ccl2, Monocyte Chemotactic Protein 1, Mcp-1, Monoc Chemotactic Protein 1, Mcp-1, Monocyte Chemoattractant Prot Monocyte Chemotactic And Activating Factor, Mcaf, Monocyte Protein Je, Hc11; Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Monocyte Chemoattractant Protein 1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 Plys S Expression_system_vector_type: Plasmid Expression_system_plasmid: Paed-4
symmetry	Space Group: P 3 2 1	R_factor 0.201 R_Free 0.282
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.200 99.200 78.900 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.80 Å
related structures	by homologous chain: 1DOL, 1DON, 1MKF
Gene Ontology	Chain Function Process Component A D
Primary reference	Structural basis of chemokine sequestration by a herpesvirus decoy receptor., Alexander JM, Nelson CA, van Berkel V, Lau EK, Studts JM, Brett TJ, Speck SH, Handel TM, Virgin HW, Fremont DH, Cell 2002 Nov 1;111(3):343-56. PMID:12419245

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk] Biological Unit Coordinates (1ml0.pdb1.gz) 135 Kb Biological Unit Coordinates (1ml0.pdb2.gz) 401 Kb CSU: Contacts of Structural Units for 1ML0 Likely Quarternary Molecular Structure file(s) for 1ML0 Retrieve 1ML0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ML0 from S2C, [Save to disk]

View 1ML0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ML0

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ML0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ml0a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ml0d_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ml0] [1ml0_D] [1ml0_A] SWISS-PROT database: [P13500] [O41925] Domain organization of [CCL2_HUMAN] [O41925_MHV68] by SWISSPFAM Domain found in 1ML0: [SCY ] by SMART

Other resources with information on 1ML0

Community annotation for 1ML0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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