1DOL Chemoattractant date Nov 22, 1996
title Monocyte Chemoattractant Protein 1, I-Form
authors J.Lubkowski, G.Bujacz, L.Boque, A.Wlodawer
compound source
Molecule: Monocyte Chemoattractant Protein 1
Chain: A
Synonym: Mcp-1, Mcaf
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Bl21
symmetry Space Group: I 41 2 2
R_factor 0.200 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.860 84.860 52.760 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
related structures by homologous chain: 1ESR, 1ML0
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe structure of MCP-1 in two crystal forms provides a rare example of variable quaternary interactions., Lubkowski J, Bujacz G, Boque L, Domaille PJ, Handel TM, Wlodawer A, Nat Struct Biol 1997 Jan;4(1):64-9. PMID:8989326
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (17 Kb) [Save to disk]
  • Biological Unit Coordinates (1dol.pdb1.gz) 13 Kb
  • Biological Unit Coordinates (1dol.pdb2.gz) 50 Kb
  • CSU: Contacts of Structural Units for 1DOL
  • Likely Quarternary Molecular Structure file(s) for 1DOL
  • Retrieve 1DOL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1DOL from S2C, [Save to disk]
  • View 1DOL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1DOL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1DOL, from MSDmotif at EBI
  • Genome occurence of 1DOL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1dol__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1dol from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1dol] [1dol_A]
  • SWISS-PROT database: [P13500]
  • Domain organization of [CCL2_HUMAN] by SWISSPFAM
  • Domain found in 1DOL: [SCY ] by SMART
  • Other resources with information on 1DOL
  • Community annotation for 1DOL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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