1ML0 Immune System date Aug 29, 2002
title Viral Chemokine Binding Protein M3 From Murine Gammaherpesvi Complex With The P8a Variant Of Cc-Chemokine Mcp-1
authors J.M.Alexander, D.H.Fremont
compound source
Molecule: M3 Protein
Chain: A
Engineered: Yes
Organism_scientific: Murid Herpesvirus 4
Organism_common: Murine Herpesvirus 68
Organism_taxid: 33708
Gene: M3
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus

Molecule: Small Inducible Cytokine
Chain: D
Synonym: Ccl2, Monocyte Chemotactic Protein 1, Mcp-1, Monoc Chemotactic Protein 1, Mcp-1, Monocyte Chemoattractant Prot Monocyte Chemotactic And Activating Factor, Mcaf, Monocyte Protein Je, Hc11;
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Monocyte Chemoattractant Protein 1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21 Plys S
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Paed-4
symmetry Space Group: P 3 2 1
R_factor 0.201 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.200 99.200 78.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.80 Å
related structures by homologous chain: 1DOL, 1DON, 1MKF
Gene
Ontology
ChainFunctionProcessComponent
D


Primary referenceStructural basis of chemokine sequestration by a herpesvirus decoy receptor., Alexander JM, Nelson CA, van Berkel V, Lau EK, Studts JM, Brett TJ, Speck SH, Handel TM, Virgin HW, Fremont DH, Cell 2002 Nov 1;111(3):343-56. PMID:12419245
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (1ml0.pdb1.gz) 138 Kb
  • Biological Unit Coordinates (1ml0.pdb2.gz) 409 Kb
  • CSU: Contacts of Structural Units for 1ML0
  • Likely Quarternary Molecular Structure file(s) for 1ML0
  • Retrieve 1ML0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ML0 from S2C, [Save to disk]
  • View 1ML0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ML0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1ML0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ml0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ml0d_, region D [Jmol] [rasmolscript] [script source]
  • Fold representative 1ml0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ml0] [1ml0_D] [1ml0_A]
  • SWISS-PROT database: [P13500] [O41925]
  • Domain organization of [CCL2_HUMAN] [O41925_MHV68] by SWISSPFAM
  • Domain found in 1ML0: [SCY ] by SMART
  • Alignments of the sequence of 1ML0 with the sequences similar proteins can be viewed for 1ML0's classification [CCL2_HUMAN] [O41925_MHV68] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [CCL2_HUMAN] [O41925_MHV68] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1ML0
  • Community annotation for 1ML0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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