1N0F Biosynthetic Protein date Oct 13, 2002
title Crystal Structure Of A Cell Division And Cell Wall Biosynthesis Protein Upf0040 From Mycoplasma Pneumoniae: Indication Of A Novel Fold With A Possible New Conserved Sequence Motif
authors S.Chen, J.Jancrick, H.Yokota, R.Kim, S.H.Kim, Berkeley Structural Genomics Center (Bsgc)
compound source
Molecule: Protein Mraz
Chain: A, B, C, D, E, F, G, H
Synonym: Upf0040 Pfam Protein
Engineered: Yes
 Organism_scientific: Mycoplasma Pneumoniae
Organism_taxid: 2104
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.240 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
84.893 101.180 169.046 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
related structures by homologous chain: 1N0G
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceCrystal structure of a protein associated with cell division from Mycoplasma pneumoniae (GI: 13508053): a novel fold with a conserved sequence motif., Chen S, Jancrick J, Yokota H, Kim R, Kim SH, Proteins 2004 Jun 1;55(4):785-91. PMID:15146477
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (193 Kb) [Save to disk]
  • Biological Unit Coordinates (1n0f.pdb1.gz) 185 Kb
  • CSU: Contacts of Structural Units for 1N0F
  • Likely Quarternary Molecular Structure file(s) for 1N0F
  • Structure Factors (509 Kb)
  • Retrieve 1N0F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1N0F from S2C, [Save to disk]
  • Re-refined 1n0f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1N0F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1N0F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1N0F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1n0fa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1n0fb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1n0fc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1n0fd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1n0fe_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1n0ff_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1n0fg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1n0fh_, region H [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1n0f_E] [1n0f_A] [1n0f] [1n0f_F] [1n0f_D] [1n0f_B] [1n0f_G] [1n0f_H] [1n0f_C]
  • SWISS-PROT database: [P75467]
  • Domain organization of [MRAZ_MYCPN] by SWISSPFAM
    • Other resources with information on 1N0F
  • Community annotation for 1N0F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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