1NKD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
note 1NKD is a representative structure
related structures by homologous chain: 1RPO
Primary referenceStructural parameters for proteins derived from the atomic resolution (1.09 A) structure of a designed variant of the ColE1 ROP protein., Vlassi M, Dauter Z, Wilson KS, Kokkinidis M, Acta Crystallogr D Biol Crystallogr 1998 Nov 1;54(Pt 6 Pt 2):1245-60. PMID:10089502
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (1nkd.pdb1.gz) 41 Kb
  • CSU: Contacts of Structural Units for 1NKD
  • Likely Quarternary Molecular Structure file(s) for 1NKD
  • Structure Factors (403 Kb)
  • Retrieve 1NKD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NKD from S2C, [Save to disk]
  • Re-refined 1nkd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1NKD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nkd] [1nkd_A]
  • SWISS-PROT database: [P03051]

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