1NOV NODAMURA VIRUS date
authors Natarajan, P., Johnson, J.E.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceResolution of space-group ambiguity and structure determination of nodamura virus to 3.3 A resolution from pseudo-R32 (monoclinic) crystals., Zlotnick A, Natarajan P, Munshi S, Johnson JE, Acta Crystallogr D Biol Crystallogr. 1997 Nov 1;53(Pt 6):738-46. PMID:15299863
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (1nov.pdb1.gz) 7432 Kb
  • CSU: Contacts of Structural Units for 1NOV
  • Likely Quarternary Molecular Structure file(s) for 1NOV
  • Structure Factors (13953 Kb)
  • Retrieve 1NOV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1NOV from S2C, [Save to disk]
  • View 1NOV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1NOV
  • VIPERdb: visual, structural and computational analysis of 1NOV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1NOV, from MSDmotif at EBI
  • Genome occurence of 1NOV's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1nova_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1novb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1novc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1nov_D] [1nov_B] [1nov_A] [1nov_C] [1nov_F] [1nov] [1nov_E]
  • SWISS-PROT database: [P12871]
  • Belongs to the insect nodavirus channel-forming chain f (gamma-peptide) family according to TCDB.
  • Domain organization of [COAT_NODAV] by SWISSPFAM
  • Other resources with information on 1NOV
  • Community annotation for 1NOV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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