1OCY	Structural Protein	date	Feb 11, 2003
title	Structure Of The Receptor-Binding Domain Of The Bacteriophag Tail Fibre
authors	E.Thomassen, G.Gielen, M.Schuetz, S.Miller, M.J.Van Raaij
compound		source
Molecule: Bacteriophage T4 Short Tail Fibre Chain: A Fragment: Receptor-Binding Domain, Residues 330-527 Engineered: Yes		Organism_scientific: Bacteriophage T4 Organism_taxid: 10665 Strain: D Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm109 Expression_system_variant: De3 Expression_system_plasmid: Pet21+ Other_details: Variant As Present In Laboratory Of S. Mille Expression With Gp57 Chaperone
symmetry	Space Group: P 3 2 1	R_factor 0.143 R_Free 0.152
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.782 50.782 435.647 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	CIT, SO4, ZN	enzyme
related structures	by homologous chain: 1H6W
Gene Ontology	Chain Function Process Component A
Primary reference	The structure of the receptor-binding domain of the bacteriophage T4 short tail fibre reveals a knitted trimeric metal-binding fold., Thomassen E, Gielen G, Schutz M, Schoehn G, Abrahams JP, Miller S, van Raaij MJ, J Mol Biol 2003 Aug 8;331(2):361-73. PMID:12888344

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (1ocy.pdb1.gz) 251 Kb LPC: Ligand-Protein Contacts for 1OCY CSU: Contacts of Structural Units for 1OCY Likely Quarternary Molecular Structure file(s) for 1OCY Structure Factors (695 Kb) Retrieve 1OCY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OCY from S2C, [Save to disk] Re-refined 1ocy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OCY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OCY

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1OCY from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OCY, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ocya_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ocy_A] [1ocy] SWISS-PROT database: [P10930] Belongs to the gp27/5 t4-baseplate (t4-bp) family according to TCDB. Domain organization of [VG12_BPT4] by SWISSPFAM

Other resources with information on 1OCY

Community annotation for 1OCY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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