1OE4 Hydrolase Dna date Mar 19, 2003
title Xenopus Smug1, An Anti-Mutator Uracil-Dna Glycosylase
authors J.E.A.Wibley, L.H.Pearl
compound source
Molecule: Single-Strand Selective Monofunctional Uracil Dna Glycosylase;
Chain: A, B
Fragment: Residues 1-247
Synonym: Smug1
Ec: 3.2.2.-
Engineered: Yes
Organism_scientific: Xenopus Laevis
Organism_common: African Clawed Frog
Organism_taxid: 8355
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 5'-D(Cpcpcpgptpgpapgptpcpcpg)-3'
Chain: E

Synthetic: Yes

Molecule: 5'-D(Cpgpgpapcptp3drapcpgpgpg)-3'
Chain: F

Synthetic: Yes
symmetry Space Group: C 1 2 1
R_factor 0.177 R_Free 0.216
length a length b length c angle alpha angle beta angle gamma
121.681 85.936 79.126 90.00 118.36 90.00
method X-Ray Diffractionresolution 2.0 Å
ligand 3DR, GOL, IPA enzyme Hydrolase E.C.3.2.2 BRENDA
related structures by homologous chain: 1YRE
A, B

Primary referenceStructure and specificity of the vertebrate anti-mutator uracil-DNA glycosylase SMUG1., Wibley JE, Waters TR, Haushalter K, Verdine GL, Pearl LH, Mol Cell. 2003 Jun;11(6):1647-59. PMID:12820976
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (1oe4.pdb1.gz) 103 Kb
  • LPC: Ligand-Protein Contacts for 1OE4
  • CSU: Contacts of Structural Units for 1OE4
  • Likely Quarternary Molecular Structure file(s) for 1OE4
  • Structure Factors (755 Kb)
  • Retrieve 1OE4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1OE4 from S2C, [Save to disk]
  • Re-refined 1oe4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1OE4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1OE4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1OE4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1oe4a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1oe4b_, region B [Jmol] [rasmolscript] [script source]
  • Fold representative 1oe4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1oe4_B] [1oe4] [1oe4_E] [1oe4_F] [1oe4_A]
  • SWISS-PROT database: [Q9YGN6]
  • Domain organization of [SMUG1_XENLA] by SWISSPFAM
  • Other resources with information on 1OE4
  • Community annotation for 1OE4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science