OCA Atlas for 1P5F

1P5F

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

related structures

by homologous chain: 1SOA

Gene
Ontology

Chain	Function	Process	Component
A	transcription coactivator ac... peroxiredoxin activity glyoxalase (glycolic acid-fo...	synaptic transmission, dopam... negative regulation of prote... positive regulation of pepti... dopamine uptake involved in ... positive regulation of L-dop...

Primary reference

The 1.1-A resolution crystal structure of DJ-1, the protein mutated in autosomal recessive early onset Parkinson's disease., Wilson MA, Collins JL, Hod Y, Ringe D, Petsko GA, Proc Natl Acad Sci U S A 2003 Aug 5;100(16):9256-61. Epub 2003 Jul 10. PMID:12855764

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]

Biological Unit Coordinates (1p5f.pdb1.gz) 140 Kb

Biological Unit Coordinates (1p5f.pdb2.gz) 70 Kb

CSU: Contacts of Structural Units for 1P5F

Likely Quarternary Molecular Structure file(s) for 1P5F

Structure Factors (825 Kb)

Retrieve 1P5F in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1P5F from S2C, [Save to disk]

Re-refined 1p5f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1P5F in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1p5f] [1p5f_A]

SWISS-PROT database: [Q99497]

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