1SOA	Human DJ-1 with sulfinic acid	date
authors	Canet-Aviles, R., Wilson, M.A., Miller, D.W., Ahmad, R., McLendon, C., Bandyopadhyay, S., Baptista, M.J., Ringe, D., Petsko, G.A., Cookson, M.R.
compound		source
symmetry		R_factor R_Free 0.1407
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	1.20
ligand	CSD	enzyme
related structures	by homologous chain: 1P5F, 1Q2U
Gene Ontology	Chain Function Process Component A transcription coactivator ac... peroxiredoxin activity glyoxalase (glycolic acid-fo... synaptic transmission, dopam... negative regulation of prote... positive regulation of pepti... dopamine uptake involved in ... positive regulation of L-dop...
Primary reference	The Parkinson's disease protein DJ-1 is neuroprotective due to cysteine-sulfinic acid-driven mitochondrial localization., Canet-Aviles RM, Wilson MA, Miller DW, Ahmad R, McLendon C, Bandyopadhyay S, Baptista MJ, Ringe D, Petsko GA, Cookson MR, Proc Natl Acad Sci U S A. 2004 Jun 15;101(24):9103-8. Epub 2004 Jun 4. PMID:15181200

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk] Biological Unit Coordinates (1soa.pdb1.gz) 144 Kb LPC: Ligand-Protein Contacts for 1SOA CSU: Contacts of Structural Units for 1SOA Likely Quarternary Molecular Structure file(s) for 1SOA Structure Factors (1027 Kb) Retrieve 1SOA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1SOA from S2C, [Save to disk] Re-refined 1soa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1SOA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1SOA

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1SOA from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1SOA, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1soaa_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1soa_A] [1soa] SWISS-PROT database: [Q99497] Domain organization of [PARK7_HUMAN] by SWISSPFAM

Other resources with information on 1SOA

Community annotation for 1SOA at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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