1SOA Protein Binding date Mar 13, 2004
title Human Dj-1 With Sulfinic Acid
authors R.Canet-Aviles, M.A.Wilson, D.W.Miller, R.Ahmad, C.Mclendon, S.Bandyopadhyay, M.J.Baptista, D.Ringe, G.A.Petsko, M.R.Cookson
compound source
Molecule: Rna-Binding Protein Regulatory Subunit; Oncogene
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: P 31 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.130 75.130 75.094 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.20 Å
ligand CSW enzyme
related structures by homologous chain: 1P5F, 1Q2U
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Parkinson's disease protein DJ-1 is neuroprotective due to cysteine-sulfinic acid-driven mitochondrial localization., Canet-Aviles RM, Wilson MA, Miller DW, Ahmad R, McLendon C, Bandyopadhyay S, Baptista MJ, Ringe D, Petsko GA, Cookson MR, Proc Natl Acad Sci U S A 2004 Jun 15;101(24):9103-8. Epub 2004 Jun 4. PMID:15181200
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1soa.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 1SOA
  • CSU: Contacts of Structural Units for 1SOA
  • Likely Quarternary Molecular Structure file(s) for 1SOA
  • Structure Factors (1027 Kb)
  • Retrieve 1SOA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SOA from S2C, [Save to disk]
  • Re-refined 1soa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1SOA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1SOA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1SOA from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1SOA, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1soaa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1soa from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1soa_A] [1soa]
  • SWISS-PROT database: [Q99497]
  • Domain organization of [PARK7_HUMAN] by SWISSPFAM
  • Alignments of the sequence of 1SOA with the sequences similar proteins can be viewed for 1SOA's classification [PARK7_HUMAN] at ProtoMap. Click on "Neighbors List", then on the "See Alignments" button below the list.
  • A sequence distance tree ("phylogenetic tree") can be viewed for 1ACL's classification [PARK7_HUMAN] at ProtoMap. Click on the Cluster number.
  • Other resources with information on 1SOA
  • Community annotation for 1SOA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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