1Q2U Rna Binding Protein date Jul 26, 2003
title Crystal Structure Of Dj-1rs And Implication On Familial Par Disease
authors Q.Huai, Y.Sun, H.Wang, L.S.Chin, L.Li, H.Robinson, H.Ke
compound source
Molecule: Rna-Binding Protein Regulatory Subunit
Chain: A
Synonym: Dj-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Dj-1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(Codonplus)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet3e
symmetry Space Group: P 31 2 1
R_factor 0.191 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.233 75.233 75.311 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
note 1Q2U supersedes 1PS4
related structures by homologous chain: 1PS4, 1SOA
Gene
Ontology
ChainFunctionProcessComponent
A
  • negative regulation of prote...

  • Primary referenceCrystal structure of DJ-1/RS and implication on familial Parkinson's disease., Huai Q, Sun Y, Wang H, Chin LS, Li L, Robinson H, Ke H, FEBS Lett 2003 Aug 14;549(1-3):171-5. PMID:12914946
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1q2u.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (1q2u.pdb2.gz) 63 Kb
  • CSU: Contacts of Structural Units for 1Q2U
  • Likely Quarternary Molecular Structure file(s) for 1Q2U
  • Structure Factors (436 Kb)
  • Retrieve 1Q2U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1Q2U from S2C, [Save to disk]
  • Re-refined 1q2u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1Q2U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1Q2U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1Q2U, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1q2ua_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1q2u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1q2u_A] [1q2u]
  • SWISS-PROT database: [Q99497]
  • Domain organization of [PARK7_HUMAN] by SWISSPFAM
  • Other resources with information on 1Q2U
  • Community annotation for 1Q2U at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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