1P5F Unknown Function date Apr 26, 2003
title Crystal Structure Of Human Dj-1
authors M.A.Wilson, J.L.Collins, Y.Hod, D.Ringe, G.A.Petsko
compound source
Molecule: Rna-Binding Protein Regulatory Subunit
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-15b
symmetry Space Group: P 31 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
75.306 75.306 75.422 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.10 Å
related structures by homologous chain: 1SOA
Gene
Ontology
ChainFunctionProcessComponent
A
  • negative regulation of prote...

  • Primary referenceThe 1.1-A resolution crystal structure of DJ-1, the protein mutated in autosomal recessive early onset Parkinson's disease., Wilson MA, Collins JL, Hod Y, Ringe D, Petsko GA, Proc Natl Acad Sci U S A 2003 Aug 5;100(16):9256-61. Epub 2003 Jul 10. PMID:12855764
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (76 Kb) [Save to disk]
  • Biological Unit Coordinates (1p5f.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (1p5f.pdb2.gz) 72 Kb
  • CSU: Contacts of Structural Units for 1P5F
  • Likely Quarternary Molecular Structure file(s) for 1P5F
  • Structure Factors (825 Kb)
  • Retrieve 1P5F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1P5F from S2C, [Save to disk]
  • Re-refined 1p5f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1P5F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1P5F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1P5F from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1P5F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1p5fa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1p5f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1p5f_A] [1p5f]
  • SWISS-PROT database: [Q99497]
  • Domain organization of [PARK7_HUMAN] by SWISSPFAM
  • Other resources with information on 1P5F
  • Community annotation for 1P5F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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