1PED	Oxidoreductase	date	Dec 28, 1995
title	Bacterial Secondary Alcohol Dehydrogenase (Apo-Form)
authors	Y.Korkhin, F.Frolow
compound		source
Molecule: Nadp-Dependent Alcohol Dehydrogenase Chain: A, B, C, D Ec: 1.1.1.2 Engineered: Yes Other_details: Apo-Enzyme Form		Organism_scientific: Clostridium Beijerinckii Organism_taxid: 1520 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Bacterial
symmetry	Space Group: P 21 21 21	R_factor 0.215 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 80.400 102.260 193.500 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.15 Å
ligand	ZN	enzyme	Oxidoreductase E.C.1.1.1.2 BRENDA
related structures	by homologous chain: 1KEV
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Crystalline alcohol dehydrogenases from the mesophilic bacterium Clostridium beijerinckii and the thermophilic bacterium Thermoanaerobium brockii: preparation, characterization and molecular symmetry., Korkhin Y, Frolow F, Bogin O, Peretz M, Kalb AJ, Burstein Y, Acta Crystallogr D Biol Crystallogr. 1996 Jul 1;52(Pt 4):882-6. PMID:15299659

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk] Biological Unit Coordinates (1ped.pdb1.gz) 227 Kb LPC: Ligand-Protein Contacts for 1PED CSU: Contacts of Structural Units for 1PED Likely Quarternary Molecular Structure file(s) for 1PED Retrieve 1PED in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PED from S2C, [Save to disk]

View 1PED in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PED

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 1PED, from MSDmotif at EBI Genome occurence of 1PED's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1peda1, region A:1-139,A:314-351 [Jmol] [rasmolscript] [script source]     - Domain d1peda2, region A:140-313 [Jmol] [rasmolscript] [script source]     - Domain d1pedb1, region B:1-139,B:314-351 [Jmol] [rasmolscript] [script source]     - Domain d1pedb2, region B:140-313 [Jmol] [rasmolscript] [script source]     - Domain d1pedc1, region C:1-139,C:314-351 [Jmol] [rasmolscript] [script source]     - Domain d1pedc2, region C:140-313 [Jmol] [rasmolscript] [script source]     - Domain d1pedd1, region D:1-139,D:314-351 [Jmol] [rasmolscript] [script source]     - Domain d1pedd2, region D:140-313 [Jmol] [rasmolscript] [script source] Fold representative 1ped from FSSP and Dali (Families of Structurally Similar Proteins) Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ped_D] [1ped_A] [1ped] [1ped_C] [1ped_B] SWISS-PROT database: [P25984] Domain organization of [ADH_CLOBE] by SWISSPFAM

Other resources with information on 1PED

Community annotation for 1PED at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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