1PYE	Transferase	date	Jul 08, 2003
title	Crystal Structure Of Cdk2 With Inhibitor
authors	F.Zhang, C.Hamdouchi
compound		source
Molecule: Cell Division Protein Kinase 2 Chain: A Synonym: P33 Protein Kinase Ec: 2.7.1.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cdk2 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 21 21 21	R_factor 0.239 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 52.803 72.111 71.090 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	PM1	enzyme	Transferase E.C.2.7.1 BRENDA
related structures	by homologous chain: 1CKP, 1H1S
Gene Ontology	Chain Function Process Component A
Primary reference	The discovery of a new structural class of cyclin-dependent kinase inhibitors, aminoimidazo[1,2-a]pyridines., Hamdouchi C, Keyser H, Collins E, Jaramillo C, De Diego JE, Spencer CD, Dempsey JA, Anderson BD, Leggett T, Stamm NB, Schultz RM, Watkins SA, Cocke K, Lemke S, Burke TF, Beckmann RP, Dixon JT, Gurganus TM, Rankl NB, Houck KA, Zhang F, Vieth M, Espinosa J, Timm DE, Campbell RM, Patel BK, Brooks HB, Mol Cancer Ther 2004 Jan;3(1):1-9. PMID:14749470

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (1pye.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 1PYE CSU: Contacts of Structural Units for 1PYE Likely Quarternary Molecular Structure file(s) for 1PYE Retrieve 1PYE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1PYE from S2C, [Save to disk]

View 1PYE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1PYE

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1PYE, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1pyea_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1pye_A] [1pye] SWISS-PROT database: [P24941] Domain organization of [CDK2_HUMAN] by SWISSPFAM Domain found in 1PYE: [S_TKc ] by SMART

Other resources with information on 1PYE

Community annotation for 1PYE at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---