1RBL Lyase date May 12, 1993
title Structure Determination And Refinement Of Ribulose 1,5 Bisph Carboxylase(Slash)Oxygenase From Synechococcus Pcc6301
authors J.Newman, S.Gutteridge, C.I.Branden, T.A.Jones
compound source
Molecule: Ribulose 1,5 Bisphosphate Carboxylaseoxygenase ( Chain);
Chain: A, B, C, D, E, F, G, H
Ec: 4.1.1.39
Engineered: Yes
Organism_scientific: Synechococcus Elongatus
Organism_taxid: 269084
Strain: Pcc 6301

Molecule: Ribulose 1,5 Bisphosphate Carboxylaseoxygenase ( Chain);
Chain: M, I, N, J, O, K, P, L
Ec: 4.1.1.39
Engineered: Yes

Organism_scientific: Synechococcus Elongatus
Organism_taxid: 269084
Strain: Pcc 6301
symmetry Space Group: P 21 21 21
R_factor 0.200 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
223.900 111.900 199.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand CAP, FMT, MG enzyme Lyase E.C.4.1.1.39 BRENDA
related structures by homologous chain: 1RSC, 1RXO, 1UZH
Gene
Ontology
ChainFunctionProcessComponent
F, E, C, A, B, H, D, G


N, K, M, L, J, O, P, I


Primary referenceStructure determination and refinement of ribulose 1,5-bisphosphate carboxylase/oxygenase from Synechococcus PCC6301., Newman J, Branden CI, Jones TA, Acta Crystallogr D Biol Crystallogr. 1993 Nov 1;49(Pt 6):548-60. PMID:15299492
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (741 Kb) [Save to disk]
  • Biological Unit Coordinates (1rbl.pdb1.gz) 734 Kb
  • LPC: Ligand-Protein Contacts for 1RBL
  • CSU: Contacts of Structural Units for 1RBL
  • Likely Quarternary Molecular Structure file(s) for 1RBL
  • Structure Factors (736 Kb)
  • Retrieve 1RBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RBL from S2C, [Save to disk]
  • Re-refined 1rbl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RBL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RBL, from MSDmotif at EBI
  • Genome occurence of 1RBL's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rbla1, region A:148-475 [Jmol] [rasmolscript] [script source]
        - Domain d1rbla2, region A:9-147 [Jmol] [rasmolscript] [script source]
        - Domain d1rblm_, region M [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rbl_M] [1rbl_O] [1rbl_A] [1rbl_K] [1rbl_G] [1rbl_P] [1rbl_D] [1rbl_I] [1rbl] [1rbl_C] [1rbl_L] [1rbl_B] [1rbl_N] [1rbl_J] [1rbl_F] [1rbl_H] [1rbl_E]
  • SWISS-PROT database: [P00880] [P04716]
  • Domain organization of [RBL_SYNP6] [RBS_SYNP6] by SWISSPFAM
  • Domain found in 1RBL: [RuBisCO_small ] by SMART
  • Other resources with information on 1RBL
  • Community annotation for 1RBL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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