1RM1 Structure of a Yeast TFIIA/TBP/TATA-box DNA Complex date
authors Jin, X., Gewirth, D.T., Geiger, J.H.
compound source
symmetry
R_factor
R_Free 0.252
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
Gene
Ontology
ChainFunctionProcessComponent
A


B


C
  • transcription cofactor activ...


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (1rm1.pdb1.gz) 85 Kb
  • CSU: Contacts of Structural Units for 1RM1
  • Likely Quarternary Molecular Structure file(s) for 1RM1
  • Structure Factors (214 Kb)
  • Retrieve 1RM1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RM1 from S2C, [Save to disk]
  • Re-refined 1rm1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RM1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RM1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1RM1, from MSDmotif at EBI
  • Fold representative 1rm1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rm1_D] [1rm1] [1rm1_E] [1rm1_A] [1rm1_B] [1rm1_C]
  • SWISS-PROT database: [P13393] [P32773] [P32774]
  • Domain organization of [TBP_YEAST] [TOA1_YEAST] [TOA2_YEAST] by SWISSPFAM
  • Domain found in 1RM1: [TFIIA ] by SMART
  • Other resources with information on 1RM1
  • Community annotation for 1RM1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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