1RMZ	Hydrolase	date	Nov 28, 2003
title	Crystal Structure Of The Catalytic Domain Of Human Mmp12 Com With The Inhibitor Nngh At 1.3 A Resolution
authors	I.Bertini, V.Calderone, M.Fragai, C.Luchinat, S.Mangani, B.Terni
compound		source
Molecule: Macrophage Metalloelastase Chain: A Synonym: Hme, Matrix Metalloproteinase-12, Mmp-12, Macropha Elastase, Me; Ec: 3.4.24.65 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mmp12, Hme Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21
symmetry	Space Group: P 21 21 2	R_factor 0.179 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 69.194 62.564 37.262 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.34 Å
ligand	CA, NGH, ZN BindingDB	enzyme	Hydrolase E.C.3.4.24.65 BRENDA
related structures	by homologous chain: 1JK3, 1OS9
Gene Ontology	Chain Function Process Component A
Primary reference	Conformational variability of matrix metalloproteinases: beyond a single 3D structure., Bertini I, Calderone V, Cosenza M, Fragai M, Lee YM, Luchinat C, Mangani S, Terni B, Turano P, Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5334-9. Epub 2005 Apr 4. PMID:15809432

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (65 Kb) [Save to disk] Biological Unit Coordinates (1rmz.pdb1.gz) 59 Kb LPC: Ligand-Protein Contacts for 1RMZ CSU: Contacts of Structural Units for 1RMZ Likely Quarternary Molecular Structure file(s) for 1RMZ Structure Factors (515 Kb) Retrieve 1RMZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RMZ from S2C, [Save to disk] Re-refined 1rmz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RMZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RMZ

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1RMZ from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RMZ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rmza_, region A [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rmz] [1rmz_A] SWISS-PROT database: [P39900] Domain organization of [MMP12_HUMAN] by SWISSPFAM Domain found in 1RMZ: [ZnMc ] by SMART

Other resources with information on 1RMZ

Community annotation for 1RMZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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