1OS9	Hydrolase	date	Mar 19, 2003
title	Binary Enzyme-Product Complexes Of Human Mmp12
authors	I.Bertini, V.Calderone, M.Fragai, C.Luchinat, S.Mangani, B.Terni
compound		source
Molecule: Macrophage Metalloelastase Chain: A, B, C, D, E, F Synonym: Hme, Matrix Metalloproteinase-12, Mmp-12, Macropha Elastase, Me; Ec: 3.4.24.65 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mmp12 Or Hme Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 31	R_factor 0.195 R_Free 0.244
crystal cell	length a length b length c angle alpha angle beta angle gamma 125.445 125.445 72.339 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	CA, ZN	enzyme	Hydrolase E.C.3.4.24.65 BRENDA
related structures	by homologous chain: 1RMZ, 1ROS
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	X-ray structures of binary and ternary enzyme-product-inhibitor complexes of matrix metalloproteinases., Bertini I, Calderone V, Fragai M, Luchinat C, Mangani S, Terni B, Angew Chem Int Ed Engl 2003 Jun 16;42(23):2673-6. PMID:12813751

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (184 Kb) [Save to disk] Biological Unit Coordinates (1os9.pdb1.gz) 34 Kb Biological Unit Coordinates (1os9.pdb2.gz) 33 Kb Biological Unit Coordinates (1os9.pdb3.gz) 33 Kb Biological Unit Coordinates (1os9.pdb4.gz) 33 Kb Biological Unit Coordinates (1os9.pdb5.gz) 32 Kb Biological Unit Coordinates (1os9.pdb6.gz) 32 Kb Biological Unit Coordinates (1os9.pdb7.gz) 89 Kb Biological Unit Coordinates (1os9.pdb8.gz) 89 Kb Biological Unit Coordinates (1os9.pdb9.gz) 61 Kb LPC: Ligand-Protein Contacts for 1OS9 CSU: Contacts of Structural Units for 1OS9 Likely Quarternary Molecular Structure file(s) for 1OS9 Structure Factors (914 Kb) Retrieve 1OS9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1OS9 from S2C, [Save to disk] Re-refined 1os9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1OS9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1OS9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1OS9, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1os9a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1os9b_, region B [Jmol] [rasmolscript] [script source]     - Domain d1os9c_, region C [Jmol] [rasmolscript] [script source]     - Domain d1os9d_, region D [Jmol] [rasmolscript] [script source]     - Domain d1os9e_, region E [Jmol] [rasmolscript] [script source]     - Domain d1os9f_, region F [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1os9_E] [1os9_F] [1os9_B] [1os9_C] [1os9_A] [1os9] [1os9_D] SWISS-PROT database: [P39900] Domain organization of [MMP12_HUMAN] by SWISSPFAM Domain found in 1OS9: [ZnMc ] by SMART

Other resources with information on 1OS9

Community annotation for 1OS9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---