1ROS	Hydrolase	date	Dec 02, 2003
title	Crystal Structure Of Mmp-12 Complexed To 2-(1,3-Dioxo-1,3-Di Isoindol-2-Yl)Ethyl-4-(4-Ethoxy[1,1-Biphenyl]-4-Yl)-4-Oxobu Acid
authors	R.Morales, S.Perrier, J.M.Florent, J.Beltra, S.Dufour, I.De Mende P.Manceau, A.Tertre, F.Moreau, D.Compere, A.C.Dublanchet, M.O'Ga
compound		source
Molecule: Macrophage Metalloelastase Chain: A, B Fragment: Residues 106-268 Synonym: Hme, Matrix Metalloproteinase-12, Mmp-12, Macropha Elastase, Me; Ec: 3.4.24.65 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Mmp12, Hme Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgemex1
symmetry	Space Group: H 3	R_factor 0.199 R_Free 0.239
crystal cell	length a length b length c angle alpha angle beta angle gamma 123.200 123.200 59.500 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	CA, DEO, ZN	enzyme	Hydrolase E.C.3.4.24.65 BRENDA
related structures	by homologous chain: 1OS2, 1OS9
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structures of novel non-peptidic, non-zinc chelating inhibitors bound to MMP-12., Morales R, Perrier S, Florent JM, Beltra J, Dufour S, De Mendez I, Manceau P, Tertre A, Moreau F, Compere D, Dublanchet AC, O'Gara M, J Mol Biol 2004 Aug 20;341(4):1063-76. PMID:15289103

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk] Biological Unit Coordinates (1ros.pdb1.gz) 30 Kb Biological Unit Coordinates (1ros.pdb2.gz) 30 Kb LPC: Ligand-Protein Contacts for 1ROS CSU: Contacts of Structural Units for 1ROS Likely Quarternary Molecular Structure file(s) for 1ROS Structure Factors (199 Kb) Retrieve 1ROS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ROS from S2C, [Save to disk] Re-refined 1ros structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ROS in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ROS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ROS, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rosa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1rosb_, region B [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ros] [1ros_A] [1ros_B] SWISS-PROT database: [P39900] Domain organization of [MMP12_HUMAN] by SWISSPFAM Domain found in 1ROS: [ZnMc ] by SMART

Other resources with information on 1ROS

Community annotation for 1ROS at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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