1S4Z Gene Regulation date Jan 19, 2004
title Hp1 Chromo Shadow Domain In Complex With Pxvxl Motif Of Caf-
authors A.Thiru, D.Nietlispach, H.R.Mott, M.Okuwaki, D.Lyon, P.R.Nielsen, M.Hirshberg, A.Verreault, N.V.Murzina, E.D.Laue
compound source
Molecule: Chromobox Protein Homolog 1
Chain: A, B
Fragment: Chromo Shadow Domain
Synonym: Heterochromatin Protein 1 Homolog Beta, Hp1 Beta, Protein, M31, Heterochromatin Protein P25;
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Cbx1, Cbx
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Pet16b

Molecule: Chromatin Assembly Factor 1 Subunit A
Chain: C
Fragment: Chromatin Assembly Factor 1
Synonym: Caf-1 Subunit A, Chromatin Assembly Factor I P150 Caf-I 150 Kda Subunit, Caf-Ip150;
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Gene: Chaf1a, Caip150
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Pgex2t
methodSolution NMR
note 1S4Z is a representative structure
related structures by homologous chain: 1DZ1
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural basis of HP1/PXVXL motif peptide interactions and HP1 localisation to heterochromatin., Thiru A, Nietlispach D, Mott HR, Okuwaki M, Lyon D, Nielsen PR, Hirshberg M, Verreault A, Murzina NV, Laue ED, EMBO J 2004 Feb 11;23(3):489-99. Epub 2004 Feb 5. PMID:14765118
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1187 Kb) [Save to disk]
  • Biological Unit Coordinates (1s4z.pdb1.gz) 47 Kb
  • CSU: Contacts of Structural Units for 1S4Z
  • Retrieve 1S4Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S4Z from S2C, [Save to disk]
  • View 1S4Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S4Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S4Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s4za_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1s4zb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s4z_B] [1s4z_A] [1s4z_C] [1s4z]
  • SWISS-PROT database: [Q9QWF0] [P83917]
  • Domain organization of [CAF1A_MOUSE] [CBX1_MOUSE] by SWISSPFAM
  • Domains found in 1S4Z: [CHROMO] [ChSh ] by SMART
  • Other resources with information on 1S4Z
  • Community annotation for 1S4Z at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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