1SOJ	Hydrolase	date	Mar 15, 2004
title	Catalytic Domain Of Human Phosphodiesterase 3b In Complex Wi
authors	G.Scapin, S.B.Patel, C.Chung, J.P.Varnerin, S.D.Edmondson, A.Mast E.R.Parmee, J.W.Becker, S.B.Singh, L.H.Van Der Ploeg, M.R.Tota
compound		source
Molecule: Cgmp-Inhibited 3',5'-Cyclic Phosphodiesterase B Chain: A, B, C, D, E, F, G, H, I, J, K, L Fragment: Catalytic Domain, Residues 654-1073 Synonym: Cyclic Gmp Inhibited Phosphodiesterase B, Cgi-Pde Cgipde1, Cgip1; Ec: 3.1.4.17 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pde3b Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Codonplus Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet30a
symmetry	Space Group: C 1 2 1	R_factor 0.231 R_Free 0.249
crystal cell	length a length b length c angle alpha angle beta angle gamma 275.046 147.078 253.485 90.00 109.84 90.00
method	X-Ray Diffraction	resolution	2.90 Å
ligand	IBM, MG BindingDB	enzyme	Hydrolase E.C.3.1.4.17 BRENDA
related structures	by homologous chain: 1SO2
Gene Ontology	Chain Function Process Component F, A, J, K, E, B, H, C, D, I, G, L
Primary reference	Crystal structure of human phosphodiesterase 3B: atomic basis for substrate and inhibitor specificity., Scapin G, Patel SB, Chung C, Varnerin JP, Edmondson SD, Mastracchio A, Parmee ER, Singh SB, Becker JW, Van der Ploeg LH, Tota MR, Biochemistry 2004 May 25;43(20):6091-100. PMID:15147193

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (724 Kb) [Save to disk] Biological Unit Coordinates (1soj.pdb1.gz) 126 Kb Biological Unit Coordinates (1soj.pdb2.gz) 125 Kb Biological Unit Coordinates (1soj.pdb3.gz) 126 Kb Biological Unit Coordinates (1soj.pdb4.gz) 126 Kb Biological Unit Coordinates (1soj.pdb5.gz) 125 Kb Biological Unit Coordinates (1soj.pdb6.gz) 126 Kb LPC: Ligand-Protein Contacts for 1SOJ CSU: Contacts of Structural Units for 1SOJ Likely Quarternary Molecular Structure file(s) for 1SOJ Structure Factors (1803 Kb) Retrieve 1SOJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1SOJ from S2C, [Save to disk] Re-refined 1soj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1SOJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1SOJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1SOJ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1soja_, region A [Jmol] [rasmolscript] [script source]     - Domain d1sojb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1sojc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1sojd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1soje_, region E [Jmol] [rasmolscript] [script source]     - Domain d1sojf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1sojg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1sojh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1soji_, region I [Jmol] [rasmolscript] [script source]     - Domain d1sojj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1sojk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1sojl_, region L [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1soj_L] [1soj_G] [1soj_B] [1soj_C] [1soj_H] [1soj_D] [1soj] [1soj_I] [1soj_A] [1soj_J] [1soj_K] [1soj_E] [1soj_F] SWISS-PROT database: [Q13370] Domain organization of [PDE3B_HUMAN] by SWISSPFAM Domain found in 1SOJ: [HDc ] by SMART

Other resources with information on 1SOJ

Community annotation for 1SOJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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