OCA Atlas for 1SO2

1SO2

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

666, HG9, MG BindingDB

enzyme

note

1SO2 is a representative structure

related structures

by homologous chain: 1SOJ

Gene
Ontology

Chain	Function	Process	Component
A, C, D, B

Primary reference

Crystal structure of human phosphodiesterase 3B: atomic basis for substrate and inhibitor specificity., Scapin G, Patel SB, Chung C, Varnerin JP, Edmondson SD, Mastracchio A, Parmee ER, Singh SB, Becker JW, Van der Ploeg LH, Tota MR, Biochemistry 2004 May 25;43(20):6091-100. PMID:15147193

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (251 Kb) [Save to disk]

Biological Unit Coordinates (1so2.pdb1.gz) 125 Kb

Biological Unit Coordinates (1so2.pdb2.gz) 122 Kb

LPC: Ligand-Protein Contacts for 1SO2

CSU: Contacts of Structural Units for 1SO2

Likely Quarternary Molecular Structure file(s) for 1SO2

Structure Factors (725 Kb)

Retrieve 1SO2 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1SO2 from S2C, [Save to disk]

Re-refined 1so2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1SO2 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1so2] [1so2_A] [1so2_B] [1so2_C] [1so2_D]

SWISS-PROT database: [Q13370]

Domain found in 1SO2: [HDc ] by SMART

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