1SOJ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand IBM, MG BindingDB enzyme
related structures by homologous chain: 1SO2
Gene
Ontology
ChainFunctionProcessComponent
J, F, A, K, D, G, L, H, B, I, E, C


Primary referenceCrystal structure of human phosphodiesterase 3B: atomic basis for substrate and inhibitor specificity., Scapin G, Patel SB, Chung C, Varnerin JP, Edmondson SD, Mastracchio A, Parmee ER, Singh SB, Becker JW, Van der Ploeg LH, Tota MR, Biochemistry 2004 May 25;43(20):6091-100. PMID:15147193
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (724 Kb) [Save to disk]
  • Biological Unit Coordinates (1soj.pdb1.gz) 126 Kb
  • Biological Unit Coordinates (1soj.pdb2.gz) 125 Kb
  • Biological Unit Coordinates (1soj.pdb3.gz) 126 Kb
  • Biological Unit Coordinates (1soj.pdb4.gz) 126 Kb
  • Biological Unit Coordinates (1soj.pdb5.gz) 125 Kb
  • Biological Unit Coordinates (1soj.pdb6.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 1SOJ
  • CSU: Contacts of Structural Units for 1SOJ
  • Likely Quarternary Molecular Structure file(s) for 1SOJ
  • Structure Factors (1803 Kb)
  • Retrieve 1SOJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1SOJ from S2C, [Save to disk]
  • Re-refined 1soj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1SOJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1soj] [1soj_A] [1soj_B] [1soj_C] [1soj_D] [1soj_E] [1soj_F] [1soj_G] [1soj_H] [1soj_I] [1soj_J] [1soj_K] [1soj_L]
  • SWISS-PROT database: [Q13370]
  • Domain found in 1SOJ: [HDc ] by SMART

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