1T6L	Replication	date	May 06, 2004
title	Crystal Structure Of The Human Cytomegalovirus Dna Polymerase Subunit, Ul44
authors	B.A.Appleton, A.Loregian, D.J.Filman, D.M.Coen, J.M.Hogle
compound		source
Molecule: Dna Polymerase Processivity Factor Chain: A Synonym: Polymerase Accessory Protein, Pap, Icp36 Protein Engineered: Yes		Organism_scientific: Human Herpesvirus 5 Organism_common: Human Cytomegalovirus Organism_taxid: 10359 Gene: Ul44 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plyss Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdest15
symmetry	Space Group: P 61 2 2	R_factor 0.235 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 53.930 53.930 340.067 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.85 Å
Gene Ontology	Chain Function Process Component A
Primary reference	The Cytomegalovirus DNA Polymerase Subunit UL44 Forms a C Clamp-Shaped Dimer., Appleton BA, Loregian A, Filman DJ, Coen DM, Hogle JM, Mol Cell 2004 Jul 23;15(2):233-44. PMID:15260974

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (1t6l.pdb1.gz) 82 Kb CSU: Contacts of Structural Units for 1T6L Likely Quarternary Molecular Structure file(s) for 1T6L Structure Factors (288 Kb) Retrieve 1T6L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1T6L from S2C, [Save to disk] Re-refined 1t6l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1T6L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1T6L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1T6L, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1t6la1, region A:10-135 [Jmol] [rasmolscript] [script source]     - Domain d1t6la2, region A:136-270 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1t6l_A] [1t6l] SWISS-PROT database: [P16790] Domain organization of [VPAP_HCMVA] by SWISSPFAM

Other resources with information on 1T6L

Community annotation for 1T6L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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