1TOV Structural Genomics, Unknown Function date Jun 15, 2004
title Structural Genomics Of Caenorhabditis Elegans: Cap-Gly Domai F53f4.3
authors S.Li, J.Finley, Z.J.Liu, S.H.Qiu, C.H.Luan, M.Carson, J.Tsao, D.Joh G.Lin, J.Zhao, W.Thomas, L.A.Nagy, B.Sha, L.J.Delucas, D.Richards J.Richardson, B.C.Wang, M.Luo, Southeast Collaboratory For Str Genomics (Secsg)
compound source
Molecule: Hypothetical Protein F53f4.3 In Chromosome V
Chain: A
Fragment: Cap-Gly Domain
Engineered: Yes
 Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Gene: F53f4.3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Pdest 17.1
symmetry Space Group: P 61 2 2
R_factor 0.211 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.156 64.156 101.946 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.77 Å
ligand SO4 enzyme
related structures by homologous chain: 1LPL
Primary referenceCrystal structure of the cytoskeleton-associated protein glycine-rich (CAP-Gly) domain., Li S, Finley J, Liu ZJ, Qiu SH, Chen H, Luan CH, Carson M, Tsao J, Johnson D, Lin G, Zhao J, Thomas W, Nagy LA, Sha B, DeLucas LJ, Wang BC, Luo M, J Biol Chem 2002 Dec 13;277(50):48596-601. Epub 2002 Sep 7. PMID:12221106
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk]
  • Biological Unit Coordinates (1tov.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 1TOV
  • CSU: Contacts of Structural Units for 1TOV
  • Likely Quarternary Molecular Structure file(s) for 1TOV
  • Structure Factors (143 Kb)
  • Retrieve 1TOV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1TOV from S2C, [Save to disk]
  • Re-refined 1tov structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1TOV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1TOV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1TOV, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1tova_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1tov_A] [1tov]
  • SWISS-PROT database: [Q20728]
  • Domain organization of [TBCB_CAEEL] by SWISSPFAM
  • Domain found in 1TOV: [CAP_GLY ] by SMART
    • Other resources with information on 1TOV
  • Community annotation for 1TOV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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