1TVR	Aspartyl Protease	date	Apr 16, 1996
title	Hiv-1 Rt9-Cl Tibo
authors	K.Das, J.Ding, Y.Hsiou, E.Arnold
compound		source
Molecule: Reverse Transcriptase Chain: A Ec: 2.7.7.49 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 (C Organism_taxid: 11679 Strain: Bh10 Cell_line: 293 Atcc: Accession Number 1065288 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: 293 Expression_system_vector_type: Bacterial Other_details: Human Immunodeficiency Virus Type 1 (Hiv-1) From Bh10 Isolate. Expressed And Processed By Bacterial Esc Coli. Ref. A.Hizi, Et Al., (1988) Proc. Natl. Acad. Sci. Us 1218-1222. Ref. P.K.Clark, Et Al., (1990) Aids Res. Hum. Retroviruses 6, 753-764.;
Molecule: Reverse Transcriptase Chain: B Ec: 2.7.7.49 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 (C Organism_taxid: 11679 Strain: Bh10 Cell_line: 293 Atcc: Accession Number 1065288 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: 293 Expression_system_vector_type: Bacterial Other_details: Human Immunodeficiency Virus Type 1 (Hiv-1) From Bh10 Isolate. Expressed And Processed By Bacterial Esc Coli. Ref. A.Hizi, Et Al., (1988) Proc. Natl. Acad. Sci. Us 1218-1222. Ref. P.K.Clark, Et Al., (1990) Aids Res. Hum. Retroviruses 6, 753-764.
symmetry	Space Group: C 1 2 1	R_factor 0.259 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 226.000 69.300 104.100 90.00 107.00 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	TB9 BindingDB	enzyme	Transferase E.C.2.7.7.49 BRENDA
related structures	by homologous chain: 1RT7, 1SUQ
Gene Ontology	Chain Function Process Component A B
Primary reference	Crystal structures of 8-Cl and 9-Cl TIBO complexed with wild-type HIV-1 RT and 8-Cl TIBO complexed with the Tyr181Cys HIV-1 RT drug-resistant mutant., Das K, Ding J, Hsiou Y, Clark AD Jr, Moereels H, Koymans L, Andries K, Pauwels R, Janssen PA, Boyer PL, Clark P, Smith RH Jr, Kroeger Smith MB, Michejda CJ, Hughes SH, Arnold E, J Mol Biol 1996 Dec 20;264(5):1085-100. PMID:9000632

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk] Biological Unit Coordinates (1tvr.pdb1.gz) 156 Kb LPC: Ligand-Protein Contacts for 1TVR CSU: Contacts of Structural Units for 1TVR Likely Quarternary Molecular Structure file(s) for 1TVR Structure Factors (211 Kb) Retrieve 1TVR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1TVR from S2C, [Save to disk] Re-refined 1tvr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1TVR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1TVR

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1TVR, from MSDmotif at EBI Genome occurence of 1TVR's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1tvra2, region A:1-429 [Jmol] [rasmolscript] [script source]     - Domain d1tvra1, region A:430-558 [Jmol] [rasmolscript] [script source]     - Domain d1tvrb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1tvr_A] [1tvr_B] [1tvr] SWISS-PROT database: [P03366] Domain organization of [POL_HV1B1] by SWISSPFAM

Other resources with information on 1TVR

Community annotation for 1TVR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1TVR from the Database of Macromolecular Movements. Images from IMB Jena Image Library of Biological Macromolecules.

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